MycorrhizaeV1, Main, Exploration, bibRecord, 000729

Variation in ectomycorrhizal fungal communities associated with Silver linden (Tilia tomentosa) within and across urban areas.

Identifieur interne : 000729 ( Main/Exploration ); précédent : 000728; suivant : 000730

Variation in ectomycorrhizal fungal communities associated with Silver linden (Tilia tomentosa) within and across urban areas.

Auteurs : Maarten Van Geel [Belgique] ; Kang Yu [Belgique] ; Tobias Ceulemans [Belgique] ; Gerrit Peeters [Belgique] ; Kasper Van Acker [Belgique] ; Willem Geerts [Belgique] ; Miguel A. Ramos [Portugal] ; Cindy Serafim [Portugal] ; Pierre Kastendeuch [France] ; Georges Najjar [France] ; Thierry Ameglio [France] ; Jérôme Ngao [France] ; Marc Saudreau [France] ; Michael Waud [Belgique] ; Bart Lievens [Belgique] ; Paula Ml Castro [Portugal] ; Ben Somers [Belgique] ; Olivier Honnay [Belgique]

Source :

FEMS microbiology ecology [ 1574-6941 ] ; 2018.

RBID : pubmed:30312413

Descripteurs français

KwdFr :
- Arbres (microbiologie), Belgique (MeSH), Biodiversité (MeSH), France (MeSH), Géographie (MeSH), Microbiologie du sol (MeSH), Mycobiome (physiologie), Mycorhizes (classification), Mycorhizes (croissance et développement), Métaux lourds (toxicité), Population urbaine (MeSH), Portugal (MeSH), Sol (MeSH), Symbiose (MeSH), Tilia (microbiologie), Urbanisation (MeSH), Écosystème (MeSH).
MESH :
- croissance et développement : Mycorhizes.
- microbiologie : Arbres, Tilia.
- physiologie : Mycobiome.
- toxicité : Mycorhizes, Métaux lourds.
- Belgique, Biodiversité, France, Géographie, Microbiologie du sol, Population urbaine, Portugal, Sol, Symbiose, Urbanisation, Écosystème.
Wicri :
- geographic : Belgique, France, Portugal.

English descriptors

KwdEn :
- Belgium (MeSH), Biodiversity (MeSH), Ecosystem (MeSH), France (MeSH), Geography (MeSH), Metals, Heavy (toxicity), Mycobiome (physiology), Mycorrhizae (classification), Mycorrhizae (growth & development), Portugal (MeSH), Soil (MeSH), Soil Microbiology (MeSH), Symbiosis (MeSH), Tilia (microbiology), Trees (microbiology), Urban Population (MeSH), Urbanization (MeSH).
MESH :
- chemical , toxicity : Metals, Heavy.
- geographic : Belgium, France, Portugal, Soil.
- classification : Mycorrhizae.
- growth & development : Mycorrhizae.
- microbiology : Tilia, Trees.
- physiology : Mycobiome.
- Biodiversity, Ecosystem, Geography, Soil Microbiology, Symbiosis, Urban Population, Urbanization.

Abstract

Trees in urban areas face harsh environmental conditions. Ectomycorrhizal fungi (EcM) form a symbiosis with many tree species and provide a range of benefits to their host through their extraradical hyphal network. Although our understanding of the environmental drivers and large scale geographical variation of EcM communities in natural ecosystems is growing, our knowledge of EcM communities within and across urban areas is still limited. Here, we characterized EcM communities using Illumina miseq sequencing on 175 root samples of the urban tree Tilia tomentosa from three European cities, namely Leuven (Belgium), Strasbourg (France) and Porto (Portugal). We found strong differences in EcM richness and community composition between cities. Soil acidity, organic matter and moisture content were significantly associated with EcM community composition. In agreement, the explained variability in EcM communities was mostly attributed to general soil characteristics, whereas very little variation was explained by city and heavy metal pollution. Overall, our results suggest that EcM communities in urban areas are significantly associated with soil characteristics, while heavy metal pollution and biogeography had little or no impact. These findings deliver new insights into EcM distribution patterns in urban areas and contribute to specific inoculation strategies to improve urban tree vitality.

DOI: 10.1093/femsec/fiy207
PubMed: 30312413

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000715
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Le document en format XML

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<author><name sortKey="Serafim, Cindy" sort="Serafim, Cindy" uniqKey="Serafim C" first="Cindy" last="Serafim">Cindy Serafim</name>
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<author><name sortKey="Waud, Michael" sort="Waud, Michael" uniqKey="Waud M" first="Michael" last="Waud">Michael Waud</name>
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<author><name sortKey="Castro, Paula Ml" sort="Castro, Paula Ml" uniqKey="Castro P" first="Paula Ml" last="Castro">Paula Ml Castro</name>
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<author><name sortKey="Somers, Ben" sort="Somers, Ben" uniqKey="Somers B" first="Ben" last="Somers">Ben Somers</name>
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<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Division of Forest, Nature & Landscape, Department of Earth & Environmental Sciences, KU Leuven, Celestijnenlaan 200E, 3001 Heverlee</wicri:regionArea>
<placeName><region type="province" nuts="2">Province du Brabant flamand</region>
<settlement type="town">Heverlee</settlement>
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<author><name sortKey="Honnay, Olivier" sort="Honnay, Olivier" uniqKey="Honnay O" first="Olivier" last="Honnay">Olivier Honnay</name>
<affiliation wicri:level="3"><nlm:affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee</wicri:regionArea>
<placeName><region type="province" nuts="2">Province du Brabant flamand</region>
<settlement type="town">Heverlee</settlement>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Variation in ectomycorrhizal fungal communities associated with Silver linden (Tilia tomentosa) within and across urban areas.</title>
<author><name sortKey="Van Geel, Maarten" sort="Van Geel, Maarten" uniqKey="Van Geel M" first="Maarten" last="Van Geel">Maarten Van Geel</name>
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<country xml:lang="fr">Belgique</country>
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<author><name sortKey="Yu, Kang" sort="Yu, Kang" uniqKey="Yu K" first="Kang" last="Yu">Kang Yu</name>
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<author><name sortKey="Ceulemans, Tobias" sort="Ceulemans, Tobias" uniqKey="Ceulemans T" first="Tobias" last="Ceulemans">Tobias Ceulemans</name>
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<country xml:lang="fr">Belgique</country>
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<author><name sortKey="Peeters, Gerrit" sort="Peeters, Gerrit" uniqKey="Peeters G" first="Gerrit" last="Peeters">Gerrit Peeters</name>
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<author><name sortKey="Van Acker, Kasper" sort="Van Acker, Kasper" uniqKey="Van Acker K" first="Kasper" last="Van Acker">Kasper Van Acker</name>
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<country xml:lang="fr">Belgique</country>
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<author><name sortKey="Geerts, Willem" sort="Geerts, Willem" uniqKey="Geerts W" first="Willem" last="Geerts">Willem Geerts</name>
<affiliation wicri:level="3"><nlm:affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee</wicri:regionArea>
<placeName><region type="province" nuts="2">Province du Brabant flamand</region>
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<author><name sortKey="Ramos, Miguel A" sort="Ramos, Miguel A" uniqKey="Ramos M" first="Miguel A" last="Ramos">Miguel A. Ramos</name>
<affiliation wicri:level="1"><nlm:affiliation>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto, Portugal.</nlm:affiliation>
<country xml:lang="fr">Portugal</country>
<wicri:regionArea>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto</wicri:regionArea>
<wicri:noRegion>4202-401 Porto</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Serafim, Cindy" sort="Serafim, Cindy" uniqKey="Serafim C" first="Cindy" last="Serafim">Cindy Serafim</name>
<affiliation wicri:level="1"><nlm:affiliation>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto, Portugal.</nlm:affiliation>
<country xml:lang="fr">Portugal</country>
<wicri:regionArea>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto</wicri:regionArea>
<wicri:noRegion>4202-401 Porto</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kastendeuch, Pierre" sort="Kastendeuch, Pierre" uniqKey="Kastendeuch P" first="Pierre" last="Kastendeuch">Pierre Kastendeuch</name>
<affiliation wicri:level="3"><nlm:affiliation>Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie, Strasbourg University, Boulevard Sébastien Brant 300, 67412 Illkirch, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie, Strasbourg University, Boulevard Sébastien Brant 300, 67412 Illkirch</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Alsace (région administrative)</region>
<settlement type="city">Illkirch</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Najjar, Georges" sort="Najjar, Georges" uniqKey="Najjar G" first="Georges" last="Najjar">Georges Najjar</name>
<affiliation wicri:level="3"><nlm:affiliation>Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie, Strasbourg University, Boulevard Sébastien Brant 300, 67412 Illkirch, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie, Strasbourg University, Boulevard Sébastien Brant 300, 67412 Illkirch</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Alsace (région administrative)</region>
<settlement type="city">Illkirch</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ameglio, Thierry" sort="Ameglio, Thierry" uniqKey="Ameglio T" first="Thierry" last="Ameglio">Thierry Ameglio</name>
<affiliation wicri:level="3"><nlm:affiliation>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand</wicri:regionArea>
<placeName><region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Auvergne (région administrative)</region>
<settlement type="city">Clermont-Ferrand</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ngao, Jerome" sort="Ngao, Jerome" uniqKey="Ngao J" first="Jérôme" last="Ngao">Jérôme Ngao</name>
<affiliation wicri:level="3"><nlm:affiliation>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand</wicri:regionArea>
<placeName><region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Auvergne (région administrative)</region>
<settlement type="city">Clermont-Ferrand</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Saudreau, Marc" sort="Saudreau, Marc" uniqKey="Saudreau M" first="Marc" last="Saudreau">Marc Saudreau</name>
<affiliation wicri:level="3"><nlm:affiliation>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand</wicri:regionArea>
<placeName><region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Auvergne (région administrative)</region>
<settlement type="city">Clermont-Ferrand</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Waud, Michael" sort="Waud, Michael" uniqKey="Waud M" first="Michael" last="Waud">Michael Waud</name>
<affiliation wicri:level="3"><nlm:affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee</wicri:regionArea>
<placeName><region type="province" nuts="2">Province du Brabant flamand</region>
<settlement type="town">Heverlee</settlement>
<settlement type="city">Louvain</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Campus De Nayer, 2860 Sint Katelijne-Waver, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Campus De Nayer, 2860 Sint Katelijne-Waver</wicri:regionArea>
<wicri:noRegion>2860 Sint Katelijne-Waver</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lievens, Bart" sort="Lievens, Bart" uniqKey="Lievens B" first="Bart" last="Lievens">Bart Lievens</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Campus De Nayer, 2860 Sint Katelijne-Waver, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Campus De Nayer, 2860 Sint Katelijne-Waver</wicri:regionArea>
<wicri:noRegion>2860 Sint Katelijne-Waver</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Castro, Paula Ml" sort="Castro, Paula Ml" uniqKey="Castro P" first="Paula Ml" last="Castro">Paula Ml Castro</name>
<affiliation wicri:level="1"><nlm:affiliation>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto, Portugal.</nlm:affiliation>
<country xml:lang="fr">Portugal</country>
<wicri:regionArea>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto</wicri:regionArea>
<wicri:noRegion>4202-401 Porto</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Somers, Ben" sort="Somers, Ben" uniqKey="Somers B" first="Ben" last="Somers">Ben Somers</name>
<affiliation wicri:level="3"><nlm:affiliation>Division of Forest, Nature & Landscape, Department of Earth & Environmental Sciences, KU Leuven, Celestijnenlaan 200E, 3001 Heverlee, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Division of Forest, Nature & Landscape, Department of Earth & Environmental Sciences, KU Leuven, Celestijnenlaan 200E, 3001 Heverlee</wicri:regionArea>
<placeName><region type="province" nuts="2">Province du Brabant flamand</region>
<settlement type="town">Heverlee</settlement>
<settlement type="city">Louvain</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Honnay, Olivier" sort="Honnay, Olivier" uniqKey="Honnay O" first="Olivier" last="Honnay">Olivier Honnay</name>
<affiliation wicri:level="3"><nlm:affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee</wicri:regionArea>
<placeName><region type="province" nuts="2">Province du Brabant flamand</region>
<settlement type="town">Heverlee</settlement>
<settlement type="city">Louvain</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">FEMS microbiology ecology</title>
<idno type="eISSN">1574-6941</idno>
<imprint><date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Belgium (MeSH)</term>
<term>Biodiversity (MeSH)</term>
<term>Ecosystem (MeSH)</term>
<term>France (MeSH)</term>
<term>Geography (MeSH)</term>
<term>Metals, Heavy (toxicity)</term>
<term>Mycobiome (physiology)</term>
<term>Mycorrhizae (classification)</term>
<term>Mycorrhizae (growth & development)</term>
<term>Portugal (MeSH)</term>
<term>Soil (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Symbiosis (MeSH)</term>
<term>Tilia (microbiology)</term>
<term>Trees (microbiology)</term>
<term>Urban Population (MeSH)</term>
<term>Urbanization (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Arbres (microbiologie)</term>
<term>Belgique (MeSH)</term>
<term>Biodiversité (MeSH)</term>
<term>France (MeSH)</term>
<term>Géographie (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Mycobiome (physiologie)</term>
<term>Mycorhizes (classification)</term>
<term>Mycorhizes (croissance et développement)</term>
<term>Métaux lourds (toxicité)</term>
<term>Population urbaine (MeSH)</term>
<term>Portugal (MeSH)</term>
<term>Sol (MeSH)</term>
<term>Symbiose (MeSH)</term>
<term>Tilia (microbiologie)</term>
<term>Urbanisation (MeSH)</term>
<term>Écosystème (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="toxicity" xml:lang="en"><term>Metals, Heavy</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>Belgium</term>
<term>France</term>
<term>Portugal</term>
<term>Soil</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Mycorhizes</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Mycorrhizae</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Arbres</term>
<term>Tilia</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Tilia</term>
<term>Trees</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Mycobiome</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Mycobiome</term>
</keywords>
<keywords scheme="MESH" qualifier="toxicité" xml:lang="fr"><term>Mycorhizes</term>
<term>Métaux lourds</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term>
<term>Ecosystem</term>
<term>Geography</term>
<term>Soil Microbiology</term>
<term>Symbiosis</term>
<term>Urban Population</term>
<term>Urbanization</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Belgique</term>
<term>Biodiversité</term>
<term>France</term>
<term>Géographie</term>
<term>Microbiologie du sol</term>
<term>Population urbaine</term>
<term>Portugal</term>
<term>Sol</term>
<term>Symbiose</term>
<term>Urbanisation</term>
<term>Écosystème</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Belgique</term>
<term>France</term>
<term>Portugal</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Trees in urban areas face harsh environmental conditions. Ectomycorrhizal fungi (EcM) form a symbiosis with many tree species and provide a range of benefits to their host through their extraradical hyphal network. Although our understanding of the environmental drivers and large scale geographical variation of EcM communities in natural ecosystems is growing, our knowledge of EcM communities within and across urban areas is still limited. Here, we characterized EcM communities using Illumina miseq sequencing on 175 root samples of the urban tree Tilia tomentosa from three European cities, namely Leuven (Belgium), Strasbourg (France) and Porto (Portugal). We found strong differences in EcM richness and community composition between cities. Soil acidity, organic matter and moisture content were significantly associated with EcM community composition. In agreement, the explained variability in EcM communities was mostly attributed to general soil characteristics, whereas very little variation was explained by city and heavy metal pollution. Overall, our results suggest that EcM communities in urban areas are significantly associated with soil characteristics, while heavy metal pollution and biogeography had little or no impact. These findings deliver new insights into EcM distribution patterns in urban areas and contribute to specific inoculation strategies to improve urban tree vitality.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30312413</PMID>
<DateCompleted><Year>2019</Year>
<Month>07</Month>
<Day>30</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>07</Month>
<Day>30</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1574-6941</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>94</Volume>
<Issue>12</Issue>
<PubDate><Year>2018</Year>
<Month>12</Month>
<Day>01</Day>
</PubDate>
</JournalIssue>
<Title>FEMS microbiology ecology</Title>
<ISOAbbreviation>FEMS Microbiol Ecol</ISOAbbreviation>
</Journal>
<ArticleTitle>Variation in ectomycorrhizal fungal communities associated with Silver linden (Tilia tomentosa) within and across urban areas.</ArticleTitle>
<ELocationID EIdType="doi" ValidYN="Y">10.1093/femsec/fiy207</ELocationID>
<Abstract><AbstractText>Trees in urban areas face harsh environmental conditions. Ectomycorrhizal fungi (EcM) form a symbiosis with many tree species and provide a range of benefits to their host through their extraradical hyphal network. Although our understanding of the environmental drivers and large scale geographical variation of EcM communities in natural ecosystems is growing, our knowledge of EcM communities within and across urban areas is still limited. Here, we characterized EcM communities using Illumina miseq sequencing on 175 root samples of the urban tree Tilia tomentosa from three European cities, namely Leuven (Belgium), Strasbourg (France) and Porto (Portugal). We found strong differences in EcM richness and community composition between cities. Soil acidity, organic matter and moisture content were significantly associated with EcM community composition. In agreement, the explained variability in EcM communities was mostly attributed to general soil characteristics, whereas very little variation was explained by city and heavy metal pollution. Overall, our results suggest that EcM communities in urban areas are significantly associated with soil characteristics, while heavy metal pollution and biogeography had little or no impact. These findings deliver new insights into EcM distribution patterns in urban areas and contribute to specific inoculation strategies to improve urban tree vitality.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Van Geel</LastName>
<ForeName>Maarten</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yu</LastName>
<ForeName>Kang</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Division of Forest, Nature & Landscape, Department of Earth & Environmental Sciences, KU Leuven, Celestijnenlaan 200E, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ceulemans</LastName>
<ForeName>Tobias</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Peeters</LastName>
<ForeName>Gerrit</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>van Acker</LastName>
<ForeName>Kasper</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Geerts</LastName>
<ForeName>Willem</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ramos</LastName>
<ForeName>Miguel A</ForeName>
<Initials>MA</Initials>
<AffiliationInfo><Affiliation>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto, Portugal.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Serafim</LastName>
<ForeName>Cindy</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto, Portugal.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kastendeuch</LastName>
<ForeName>Pierre</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie, Strasbourg University, Boulevard Sébastien Brant 300, 67412 Illkirch, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Najjar</LastName>
<ForeName>Georges</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie, Strasbourg University, Boulevard Sébastien Brant 300, 67412 Illkirch, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ameglio</LastName>
<ForeName>Thierry</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ngao</LastName>
<ForeName>Jérôme</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Saudreau</LastName>
<ForeName>Marc</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Université Clermont Auvergne, INRA, Chemin de Beaulieu 5, 63000 Clermont Ferrand, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Waud</LastName>
<ForeName>Michael</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Campus De Nayer, 2860 Sint Katelijne-Waver, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lievens</LastName>
<ForeName>Bart</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Campus De Nayer, 2860 Sint Katelijne-Waver, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Castro</LastName>
<ForeName>Paula Ml</ForeName>
<Initials>PM</Initials>
<AffiliationInfo><Affiliation>Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Arquiteto Lobão Vital 172, 4202-401 Porto, Portugal.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Somers</LastName>
<ForeName>Ben</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Division of Forest, Nature & Landscape, Department of Earth & Environmental Sciences, KU Leuven, Celestijnenlaan 200E, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Honnay</LastName>
<ForeName>Olivier</ForeName>
<Initials>O</Initials>
<AffiliationInfo><Affiliation>Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Heverlee, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>FEMS Microbiol Ecol</MedlineTA>
<NlmUniqueID>8901229</NlmUniqueID>
<ISSNLinking>0168-6496</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D019216">Metals, Heavy</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012987">Soil</NameOfSubstance>
</Chemical>
</ChemicalList>
<MeshHeadingList><MeshHeading><DescriptorName UI="D001530" MajorTopicYN="N" Type="Geographic">Belgium</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D044822" MajorTopicYN="N">Biodiversity</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005602" MajorTopicYN="N" Type="Geographic">France</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005843" MajorTopicYN="N">Geography</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D019216" MajorTopicYN="N">Metals, Heavy</DescriptorName>
<QualifierName UI="Q000633" MajorTopicYN="N">toxicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000072761" MajorTopicYN="N">Mycobiome</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011174" MajorTopicYN="N" Type="Geographic">Portugal</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032384" MajorTopicYN="N">Tilia</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014505" MajorTopicYN="N">Urban Population</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014507" MajorTopicYN="N">Urbanization</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year>
<Month>07</Month>
<Day>25</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2018</Year>
<Month>10</Month>
<Day>11</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2018</Year>
<Month>10</Month>
<Day>13</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2019</Year>
<Month>7</Month>
<Day>31</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2018</Year>
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<tree><country name="Belgique"><region name="Province du Brabant flamand"><name sortKey="Van Geel, Maarten" sort="Van Geel, Maarten" uniqKey="Van Geel M" first="Maarten" last="Van Geel">Maarten Van Geel</name>
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<name sortKey="Waud, Michael" sort="Waud, Michael" uniqKey="Waud M" first="Michael" last="Waud">Michael Waud</name>
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<country name="France"><region name="Grand Est"><name sortKey="Kastendeuch, Pierre" sort="Kastendeuch, Pierre" uniqKey="Kastendeuch P" first="Pierre" last="Kastendeuch">Pierre Kastendeuch</name>
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Variation in ectomycorrhizal fungal communities associated with Silver linden (Tilia tomentosa) within and across urban areas.

Variation in ectomycorrhizal fungal communities associated with Silver linden (Tilia tomentosa) within and across urban areas.

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